After heavy rains, especially if they are the first decent rain in a while, it is always a good idea to stay out of the water for 2-3 days.
Some good info of current readings / water quality reports can be found here...
http://www.environment.nsw.gov.au/beach/Reportbulletin.htmwww.environment.nsw.gov.au/beachapp/BotanyBulletin.aspxThen again when the conditions are "on" just pretend the brown water is chocolate milk

and go for it, but be honest with your doctor afterwards so they can prescribe the right amount of ear bashing and drugs