Have been using hot glue on Ke Nalu paddles for a couple of years now without a problem, numerous times on each of my KNs. When I've trimmed or repaired other paddles (starboard, fanatic, hobie) I've done away with the epoxy and used hot glue, just the Bostik stuff from any hardware shop, nothing special. It holds very well.
Must be something you're doing (which probably doesn't help you

)
Are you:
making sure both the shaft and handle are hot (not HOT, just a bit hot to touch is enough)
wiggling/rotating the parts together while they're warm to distribute the glue evenly
maybe overcooking the glue (should heat it up only to the point where it just goes clear?
or is there maybe not enough glue?
Just a few thoughts, without seeing yours...if you go to the ke nalu website there will be a couple of videos on the hot glue method that might be helpful